PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648489.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 320aa    MW: 36878.1 Da    PI: 7.3716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648489.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.51.8e-51221512128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      pGfrFhPtdeelv +yL++kve+k +++ e ik++diyk++PwdLpk++++ +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+++s+
  XP_016648489.1  22 LPGFRFHPTDEELVEFYLRRKVEKKAISI-ELIKSIDIYKHDPWDLPKAISTsGEKEWYFFCKRGRKYKNSIRPNRVTGSGFWKATGIDKPIHSH 115
                     59***************************.89***************655442788**************************************8 PP

             NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ +glkktLv+y+g+a kg+ktdW+mhe+rl
  XP_016648489.1 116 ggqGHACIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 151
                     5544445***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.10321190IPR003441NAC domain
SuperFamilySSF1019413.53E-5421190IPR003441NAC domain
PfamPF023651.4E-2623151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDSNYTSTKD DHQYIDEDDV QLPGFRFHPT DEELVEFYLR RKVEKKAISI ELIKSIDIYK  60
HDPWDLPKAI STSGEKEWYF FCKRGRKYKN SIRPNRVTGS GFWKATGIDK PIHSHGGQGH  120
ACIGLKKTLV YYRGSAGKGT KTDWMMHEFR LPNPAGSNEY IHRSSNTKNI NSTDPQQEAE  180
IWTLCRIFKR NVSYKKADWR GQSGAKRHPM DTVSSKKCTS DQDDLDQSNN YISFGASDNI  240
ICYEEKKPVV NHTNMNNFNG SNQQLHAVGQ LSSNMPATYP YMETFSNFSY QDLENELLNE  300
NWDELRSAAV HLAFDPTFLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-49121963171NAC domain-containing protein 19
4dul_A1e-49121963171NAC domain-containing protein 19
1ut7_B1e-49121963171NO APICAL MERISTEM PROTEIN
1ut7_A1e-49121963171NO APICAL MERISTEM PROTEIN
1ut4_B1e-49121963171NO APICAL MERISTEM PROTEIN
1ut4_A1e-49121963171NO APICAL MERISTEM PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226178.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK556e-82NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM5X9400.0M5X940_PRUPE; Uncharacterized protein
STRINGVIT_19s0027g00840.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-83NAC domain containing protein 42